| School Name | API (2009) | API (2008) |
| Lakewood Elementary | 931 | 922 |
| Sonoma Elementary | 896 | 879 |
| Rose Avenue Elementary | 864 | 828 |
| Enslen Elementary | 859 | 851 |
| John Fremont Elementary | 818 | 808 |
| Elihu Beard Elementary | 814 | 783 |
| Catherine Everett Elementary | 814 | 806 |
| Alberta Martone Elementary | 805 | 773 |
| Wilson Elementary | 798 | 766 |
| Roosevelt Junior High | 787 | 789 |
| John Muir Elementary | 768 | 743 |
| La Loma Junior High | 754 | 748 |
| El Vista Elementary | 733 | 723 |
| Franklin Elementary | 728 | 693 |
| William Garrison Elementary | 728 | 741 |
| Burbank Elementary | 725 | 672 |
| Fairview Elementary | 716 | 693 |
| James Marshall Elementary | 712 | 691 |
| Tuolumne Elementary | 705 | 711 |
| Mark Twain Junior High | 698 | 676 |
| Orville Wright Elementary | 696 | 658 |
| Shackelford Elementary | 695 | 660 |
| Bret Harte Elementary | 692 | 671 |
| Harriette Kirschen Elementary | 680 | 701 |
| Evelyn Hanshaw Middle | 670 | 677 |
| Robertson Road Elementary | 666 | 642 |
| Ethel Pearson Elementary | | |