| Petaluma City Schools School District | 2013 API | 2012 API |
| Sixth Grade Charter Academy at Petaluma | 907 | 836 |
| Grant Elementary | 888 | 918 |
| McNear Elementary | 861 | 887 |
| Kenilworth Junior High | 839 | 851 |
| Penngrove Elementary | 834 | 840 |
| Petaluma Junior High | 833 | 841 |
| Mary Collins Charter School at Cherry Va | 812 | 836 |
| Casa Grande High | 811 | 810 |
| Live Oak Charter | 808 | 814 |
| Petaluma High | 806 | 812 |
| Valley Vista Elementary | 802 | 828 |
| McKinley Elementary | 779 | 775 |
| McDowell Elementary | 778 | 786 |
| Valley Oaks High (Alternative) | 727 | 746 |
| Crossroads | 684 | B |
| Carpe Diem High (Continuation) | 631 | 597 |
| San Antonio High (Continuation) | 616 | 638 |
| Sonoma Mountain High (Continuation) | | |
| Valley Oaks Elementary (Alternative) | | |