| School Name | API (2009) | API (2008) |
| Joseph H. Wardlaw Elementary | 819 | 773 |
| Lincoln Elementary | 816 | 850 |
| Vallejo Charter | 811 | 747 |
| Annie Pennycook Elementary | 810 | 758 |
| Steffan Manor Elementary | 782 | 753 |
| Elmer Cave Elementary | 780 | 704 |
| Glen Cove Elementary | 779 | 721 |
| Federal Terrace Elementary | 775 | 755 |
| Johnston Cooper Elementary | 773 | 749 |
| Highland Elementary | 765 | 689 |
| Dan Mini Elementary | 763 | 744 |
| Springstowne Middle | 727 | 743 |
| Solano Middle | 725 | 688 |
| Elsa Widenmann Elementary | 725 | 717 |
| Beverly Hills Elementary | 723 | 686 |
| Jesse M. Bethel High | 717 | 660 |
| Grace Patterson Elementary | 712 | 689 |
| Mare Island Elementary | 709 | 678 |
| Loma Vista Elementary | 706 | 615 |
| MIT Academy | 705 | 706 |
| Franklin Middle | 701 | 667 |
| Mare Island Technology Academy | 694 | 693 |
| Vallejo Middle | 681 | 661 |
| Hogan High | 659 | 644 |
| Vallejo High | 634 | 646 |
| Peoples High (Continuation) | 473 | 505 |
| Community Day | | |
| HOPE | | |
| Vallejo Adult | | |
| Everest | | |