| School Name | API (2009) | API (2008) |
| Williams Elementary | 965 | 949 |
| Graystone Elementary | 952 | 938 |
| Simonds Elementary | 945 | 928 |
| Los Alamitos Elementary | 927 | 892 |
| Bret Harte Middle | 914 | 912 |
| Booksin Elementary | 906 | 879 |
| Leland High | 869 | 849 |
| Reed Elementary | 853 | 843 |
| Hacienda Science/Environmental Magnet | 852 | 844 |
| Schallenberger Elementary | 844 | 824 |
| Hammer Montessori at Galarza Elementary | 830 | 833 |
| Pioneer High | 829 | 809 |
| River Glen | 828 | 811 |
| Middle College High | 826 | 666 |
| Rachel Carson Elementary | 816 | 813 |
| Willow Glen Elementary | 814 | 785 |
| Castillero Middle | 810 | 810 |
| Allen at Steinbeck | 803 | 760 |
| Lowell Elementary | 798 | 759 |
| Terrell Elementary | 798 | 809 |
| Merritt Trace Elementary | 788 | 763 |
| John Muir Middle | 781 | 753 |
| Grant Elementary | 765 | 778 |
| Abraham Lincoln High | 753 | 723 |
| Almaden Elementary | 753 | 733 |
| Canoas Elementary | 748 | 741 |
| Gardner Elementary | 745 | 697 |
| Selma Olinder Elementary | 745 | 739 |
| Ernesto Galarza Elementary | 734 | 726 |
| Horace Mann Elementary | 727 | 716 |
| Willow Glen Middle | 719 | 740 |
| Willow Glen High | 718 | 705 |
| Washington Elementary | 715 | 719 |
| San Jose High Academy | 702 | 665 |
| Gunderson High | 688 | 688 |
| Walter L. Bachrodt Elementary | 687 | 707 |
| Downtown College Preparatory | 681 | 683 |
| Empire Gardens Elementary | 680 | 624 |
| Leland Plus (Continuation) | 665 | 645 |
| Anne Darling Elementary | 663 | 695 |
| Peter Burnett Middle | 659 | 642 |
| Herbert Hoover Middle | 642 | 656 |
| Liberty High (Alternative) | 542 | 483 |
| San Jose Community High | 520 | 446 |
| Broadway High | 520 | 489 |
| Lincoln Plus High | | |
| Community Career Academy (Continuation) | | |
| Gunderson Plus (Continuation) | | |
| Willow Glen Plus (Continuation) | | |
| Pioneer Plus (Continuation) | | |
| San Jose High Academy Plus | | |
| Metropolitan Adult Education-San Jose | | |
| San Jose Community Middle | | |