| School Name | API (2009) | API (2008) |
| Murdock-Portal Elementary | 998 | 989 |
| William Faria Elementary | 996 | 994 |
| Nelson S. Dilworth Elementary | 987 | 970 |
| Joaquin Miller Middle | 982 | 973 |
| Garden Gate Elementary | 980 | 969 |
| William Regnart Elementary | 979 | 968 |
| John F. Kennedy Middle | 977 | 968 |
| Sam H. Lawson Middle | 973 | 964 |
| Montclaire Elementary | 973 | 953 |
| L. P. Collins Elementary | 971 | 972 |
| Blue Hills Elementary | 971 | 967 |
| Abraham Lincoln Elementary | 966 | 963 |
| Louis E. Stocklmeir Elementary | 962 | 955 |
| R. I. Meyerholz Elementary | 961 | 940 |
| Stevens Creek Elementary | 957 | 940 |
| C. B. Eaton Elementary | 950 | 945 |
| West Valley Elementary | 943 | 930 |
| John Muir Elementary | 930 | 908 |
| Cupertino Middle | 917 | 913 |
| Dwight D. Eisenhower Elementary | 904 | 893 |
| D. J. Sedgwick Elementary | 879 | 863 |
| Warren E. Hyde Middle | 877 | 856 |
| Manuel De Vargas Elementary | 866 | 829 |
| Chester W. Nimitz Elementary | 840 | 852 |
| Christa McAuliffe Elementary | | |