| Stockton Unified School District | 2013 API | 2012 API |
| Stockton Unified Early College Academy | 923 | 888 |
| Rio Calaveras Elementary | 833 | 848 |
| Commodore Stockton Skills | 823 | 836 |
| Stockton Collegiate International Elementary | 817 | 801 |
| Aspire Rosa Parks Academy | 804 | 814 |
| Pacific Law Academy | 804 | 806 |
| Primary Years Academy | 794 | 810 |
| Aspire Langston Hughes Academy | 784 | 768 |
| Kohl Open Elementary | 783 | 780 |
| Valentine Peyton Elementary | 777 | 770 |
| Stockton Collegiate International Secondary | 775 | 787 |
| San Joaquin Elementary | 762 | 759 |
| Wilson Elementary | 760 | 735 |
| George W. Bush Elementary | 751 | 751 |
| Pulliam Elementary | 727 | 743 |
| Cleveland Elementary | 718 | 712 |
| Victory Elementary | 715 | 733 |
| Weber Institute | 714 | 717 |
| Hoover Elementary | 713 | 725 |
| Harrison Elementary | 713 | 676 |
| Kennedy Elementary | 710 | 720 |
| Adams Elementary | 710 | 684 |
| Pittman Charter | 700 | 665 |
| Dolores Huerta Elementary | 699 | 730 |
| Elmwood Elementary | 699 | 704 |
| King Elementary | 698 | 696 |
| Walton Development Center | 696 | 773 |
| Hazelton Elementary | 695 | 717 |
| Spanos (Alex G.) Elementary | 693 | 682 |
| Fillmore Elementary | 693 | 680 |
| Nightingale Charter | 691 | 673 |
| Wilhelmina Henry Elementary | 691 | 657 |
| Tyler Skills Elementary | 689 | 699 |
| Maxine Hong Kingston Elementary | 688 | 662 |
| George Washington Elementary | 686 | 678 |
| El Dorado Elementary | 685 | 664 |
| Grunsky Elementary | 683 | 743 |
| John Marshall Elementary | 682 | 710 |
| McKinley Elementary | 680 | 689 |
| Madison Elementary | 680 | 677 |
| Taylor Leadership Academy | 678 | 640 |
| Franklin High | 677 | 675 |
| Edison High | 672 | 660 |
| Monroe Elementary | 671 | 727 |
| August Elementary | 671 | 676 |
| Stagg Senior High | 667 | 689 |
| Montezuma Elementary | 664 | 676 |
| Alexander Hamilton Elementary | 664 | 657 |
| Cesar Chavez High | 662 | 662 |
| Roosevelt Elementary | 658 | 648 |
| Van Buren Elementary | 622 | 654 |
| John C. Fremont Elementary | 605 | 597 |
| Taft Elementary | 599 | 677 |
| Edward C. Merlo Institute of Environmental Studies | 589 | 575 |
| Stockton High | 579 | 532 |
| TEAM Charter | 575 | 666 |
| Dr. Lewis Dolphin Stallworth Sr. Charter | 541 | 561 |
| Jane Frederick High | 493 | 539 |
| Health Careers Academy | | |