| San Francisco Unified School District | 2013 API | 2012 API |
| Chin (John Yehall) Elementary | 997 | 989 |
| Clarendon Alternative Elementary | 955 | 950 |
| Yu (Alice Fong) Elementary | 954 | 954 |
| Lowell High | 948 | 956 |
| Chinese Immersion School at DeAvila | 934 | 951 |
| Stevenson (Robert Louis) Elementary | 933 | 931 |
| Ulloa Elementary | 932 | 937 |
| Lawton Alternative Elementary | 932 | 928 |
| Sherman Elementary | 931 | 906 |
| Sunset Elementary | 925 | 917 |
| Jefferson Elementary | 923 | 909 |
| Lilienthal (Claire) Elementary | 920 | 904 |
| Grattan Elementary | 916 | 922 |
| West Portal Elementary | 914 | 905 |
| Lafayette Elementary | 913 | 919 |
| Yick Wo Elementary | 907 | 915 |
| Sutro Elementary | 906 | 876 |
| Peabody (George) Elementary | 904 | 926 |
| Sloat (Commodore) Elementary | 901 | 883 |
| McKinley Elementary | 899 | 863 |
| Miraloma Elementary | 898 | 884 |
| Alamo Elementary | 897 | 909 |
| Presidio Middle | 892 | 899 |
| Feinstein (Dianne) Elementary | 892 | 872 |
| Key (Francis Scott) Elementary | 888 | 899 |
| Argonne Elementary | 884 | 895 |
| Giannini (A.P.) Middle | 882 | 882 |
| Rooftop Elementary | 880 | 877 |
| Roosevelt Middle | 873 | 858 |
| New Traditions Elementary | 873 | 853 |
| Taylor (Edward R.) Elementary | 872 | 879 |
| KIPP San Francisco Bay Academy | 868 | 906 |
| Alvarado Elementary | 863 | 848 |
| Sunnyside Elementary | 862 | 825 |
| Ortega (Jose) Elementary | 857 | 842 |
| Asawa (Ruth) San Francisco School of the Arts, A Public School. | 852 | 874 |
| Lau (Gordon J.) Elementary | 852 | 832 |
| Spring Valley Elementary | 844 | 834 |
| Creative Arts Charter | 844 | 825 |
| KIPP Bayview Academy | 839 | 865 |
| McCoppin (Frank) Elementary | 839 | 805 |
| Redding Elementary | 834 | 835 |
| Parker (Jean) Elementary | 829 | 830 |
| Garfield Elementary | 828 | 862 |
| Milk (Harvey) Civil Rights Elementary | 826 | 854 |
| Moscone (George R.) Elementary | 820 | 798 |
| Gateway Middle | 819 | 850 |
| Fairmount Elementary | 819 | 758 |
| Aptos Middle | 818 | 821 |
| Hoover (Herbert) Middle | 816 | 823 |
| King (Starr) Elementary | 812 | 791 |
| Monroe Elementary | 806 | 806 |
| Marina Middle | 804 | 809 |
| Guadalupe Elementary | 803 | 819 |
| Sheridan Elementary | 803 | 770 |
| Visitacion Valley Elementary | 800 | 781 |
| Wallenberg (Raoul) Traditional High | 799 | 801 |
| Parks (Rosa) Elementary | 796 | 793 |
| Edison Charter Academy | 795 | 795 |
| Longfellow Elementary | 793 | 811 |
| Carmichael (Bessie)/FEC | 782 | 795 |
| Marshall Elementary | 782 | 770 |
| Lincoln (Abraham) High | 778 | 772 |
| Washington (George) High | 774 | 786 |
| Revere (Paul) Elementary | 772 | 754 |
| Lakeshore Alternative Elementary | 770 | 772 |
| Balboa High | 759 | 780 |
| Galileo High | 758 | 785 |
| Carver (George Washington) Elementary | 755 | 741 |
| Hillcrest Elementary | 755 | 723 |
| Webster (Daniel) Elementary | 754 | 703 |
| Serra (Junipero) Elementary | 752 | 712 |
| Lick (James) Middle | 750 | 749 |
| Buena Vista/ Horace Mann K-8 | 748 | 725 |
| San Francisco Community Alternative | 746 | 778 |
| Gateway High | 745 | 763 |
| Sanchez Elementary | 743 | 760 |
| Denman (James) Middle | 732 | 732 |
| Burton (Phillip and Sala) Academic High | 732 | 724 |
| Muir (John) Elementary | 731 | 714 |
| Francisco Middle | 731 | 709 |
| San Francisco Public Montessori | 730 | 808 |
| Everett Middle | 728 | 692 |
| Cobb (William L.) Elementary | 725 | 708 |
| Glen Park Elementary | 719 | 777 |
| Malcolm X Academy | 711 | 725 |
| City Arts and Tech High | 711 | 692 |
| Tenderloin Community | 707 | 745 |
| Cleveland Elementary | 707 | 674 |
| Bryant Elementary | 702 | 730 |
| Academy of Arts and Sciences | 699 | 699 |
| King Jr. (Martin Luther) Academic Middle | 695 | 694 |
| Flynn (Leonard R.) Elementary | 693 | 737 |
| Chavez (Cesar) Elementary | 689 | 661 |
| El Dorado Elementary | 686 | 695 |
| Drew (Charles) College Preparatory Academy | 665 | 675 |
| O'Connell (John) High | 656 | 666 |
| Harte (Bret) Elementary | 647 | 658 |
| Leadership High | 646 | 648 |
| Marshall (Thurgood) High | 643 | 654 |
| Mission High | 641 | 640 |
| Visitacion Valley Middle | 613 | 645 |
| International Studies Academy | 603 | 647 |
| Metropolitan Arts & Technology High | 589 | 647 |
| Chinese Education Center | 578 | B |
| Jordan (June) School for Equity | 547 | 586 |
| Independence High | 528 | 565 |
| Life Learning Academy Charter | 520 | 573 |
| S.F. International High | 498 | 476 |
| Downtown High | 427 | 458 |
| Mission Education Center | 401 | 489 |
| Wells (Ida B.) High | 380 | 450 |
| Five Keys Charter (SF Sheriff's) | | |