| School Name | API (2009) | API (2008) |
| Alice Fong Yu Elementary | 951 | 946 |
| Clarendon Alternative Elementary | 950 | 926 |
| Lowell High | 949 | 951 |
| Robert Louis Stevenson Elementary | 921 | 912 |
| Alamo Elementary | 913 | 897 |
| Claire Lilienthal Elementary | 913 | 889 |
| Lawton Alternative Elementary | 912 | 909 |
| Ulloa Elementary | 911 | 892 |
| West Portal Elementary | 900 | 899 |
| Sunset Elementary | 888 | 871 |
| Jefferson Elementary | 882 | 870 |
| Francis Scott Key Elementary | 878 | 847 |
| Rooftop Elementary | 877 | 860 |
| Presidio Middle | 875 | 881 |
| George Peabody Elementary | 873 | 844 |
| Roosevelt Middle | 873 | 866 |
| Commodore Sloat Elementary | 872 | 848 |
| John Yehall Chin (Elem) | 872 | 869 |
| Yick Wo Elementary | 871 | 860 |
| Argonne Elementary | 869 | 871 |
| A. P. Giannini Middle | 869 | 865 |
| Sherman Elementary | 868 | 883 |
| Edward R. Taylor Elementary | 865 | 844 |
| Sutro Elementary | 864 | 836 |
| Lafayette Elementary | 862 | 847 |
| Dianne Feinstein Elementary | 853 | 843 |
| Miraloma Elementary | 851 | 810 |
| George R. Moscone Elementary | 844 | 855 |
| Aptos Middle | 840 | 818 |
| Sheridan Elementary | 833 | 813 |
| Herbert Hoover Middle | 833 | 827 |
| KIPP San Francisco Bay Academy | 832 | 853 |
| Jean Parker Elementary | 832 | 836 |
| Gordon J. Lau Elementary | 830 | 831 |
| Frank McCoppin Elementary | 827 | 813 |
| Spring Valley Elementary | 823 | 831 |
| Visitacion Valley Elementary | 823 | 829 |
| Grattan Elementary | 822 | 783 |
| Alvarado Elementary | 815 | 819 |
| Garfield Elementary | 812 | 850 |
| Lakeshore Alternative Elementary | 812 | 829 |
| Sunnyside Elementary | 812 | 744 |
| McKinley Elementary | 810 | 786 |
| New Traditions Elementary | 807 | 760 |
| San Francisco Community Alternative | 804 | 797 |
| Guadalupe Elementary | 803 | 771 |
| Monroe Elementary | 803 | 783 |
| Longfellow Elementary | 802 | 813 |
| Redding Elementary | 794 | 784 |
| Marina Middle | 792 | 812 |
| George Washington High | 785 | 768 |
| Glen Park Elementary | 784 | 788 |
| Harvey Milk Civil Rights Elementary | 783 | 768 |
| Jose Ortega Elementary | 782 | 797 |
| School of the Arts | 781 | 747 |
| Creative Arts Charter | 765 | 781 |
| Tenderloin Community | 759 | 707 |
| KIPP Bayview Academy | 757 | 728 |
| Galileo High | 757 | 742 |
| Abraham Lincoln High | 751 | 764 |
| Bessie Carmichael Elementary | 751 | 749 |
| Balboa High | 747 | 725 |
| Marshall Elementary | 746 | 706 |
| Raoul Wallenberg Traditional High | 744 | 675 |
| Gateway High | 743 | 718 |
| Buena Vista | 738 | 645 |
| James Lick Middle | 726 | 719 |
| Rosa Parks Elementary | 713 | 721 |
| Martin Luther King Jr. Academic Middle | 707 | 711 |
| Starr King Elementary | 705 | 699 |
| William L. Cobb Elementary | 700 | 730 |
| Malcolm X Academy | 692 | 593 |
| El Dorado Elementary | 691 | 721 |
| Sanchez Elementary | 691 | 677 |
| James Denman Middle | 690 | 693 |
| Fairmount Elementary | 687 | 718 |
| Cleveland Elementary | 683 | 654 |
| Hillcrest Elementary | 679 | 669 |
| Leonard R. Flynn Elementary | 668 | 684 |
| Bryant Elementary | 667 | 667 |
| George Washington Carver Elementary | 667 | 678 |
| Charles Drew College Preparatory Academy | 667 | 624 |
| Francisco Middle | 666 | 677 |
| Cesar Chavez Elementary | 656 | 646 |
| Visitacion Valley Middle | 652 | 661 |
| Everett Middle | 647 | 607 |
| Daniel Webster Elementary | 645 | 616 |
| Metropolitan Arts & Technology High | 629 | 637 |
| Paul Revere Elementary | 623 | 636 |
| Horace Mann Middle | 623 | 600 |
| Leadership High | 618 | 641 |
| Phillip and Sala Burton Academic High | 615 | 662 |
| Bret Harte Elementary | 613 | 623 |
| City Arts and Tech High | 610 | 640 |
| Chinese Education Center | 597 | 605 |
| John Muir Elementary | 592 | 634 |
| International Studies Academy at Enola Maxwell | 590 | 601 |
| Life Learning Academy Charter | 582 | 571 |
| Thurgood Marshall High | 575 | 629 |
| Mission High | 555 | 545 |
| John O'Connell Alternative High | 550 | 565 |
| Brown, Jr., (Willie L.) Elementary | 536 | 566 |
| June Jordan School for Equity | 504 | 530 |
| Independence High | 500 | 515 |
| Ida B. Wells High | 453 | 497 |
| Downtown High | 422 | 422 |
| Mission Education Center | 372 | 384 |
| Five Keys Charter (SF Sheriff's) | | |
| Excelsior Middle | | |
| Newcomer High | | |
| Junipero Serra Elementary | | |