| San Diego County Office of Education School District | 2013 API | 2012 API |
| Literacy First Charter | 870 | 901 |
| Mesa Region Court | 653 | B |
| San Pasqual Academy | 648 | 626 |
| Davila Day | 644 | 593 |
| San Diego County Special Education | 628 | 675 |
| Monarch | 614 | 666 |
| North Region Community School of Greater San Marcos | 549 | 615 |
| South Region Community School of Chula Vista | 508 | B |
| Metro East Region Community | 507 | B |
| South Region Community School of National City | 498 | B |
| Metro South Region Community | 494 | B |
| South Region Community School of San Diego | 482 | B |
| Metro Central Region Community | 476 | B |
| North Region Community School of Greater Escondido | 363 | 392 |
| North Coastal Consortium Schools | 359 | 419 |
| East Region Community School of Greater El Cajon | | |
| East Region Community School of Greater La Mesa | | |
| Hope Region Community | | |
| Metro Region Court | | |
| Mountain Region Court | | |
| North Region Community School of Greater Oceanside | | |
| North Region Court | | |