| San Juan Unified School District | 2013 API | 2012 API |
| Green Oaks Fundamental Elementary | 933 | 929 |
| James R. Cowan Fundamental Elementary | 915 | 928 |
| Gold River Discovery Center K-8 | 906 | 937 |
| Del Dayo Elementary | 903 | 934 |
| Mary Deterding Elementary | 894 | 919 |
| Mariemont Elementary | 894 | 901 |
| Orangevale Open K-8 | 888 | 907 |
| Pershing Elementary | 885 | 904 |
| Andrew Carnegie Middle | 864 | 867 |
| Trajan Elementary | 860 | 896 |
| Cambridge Heights Elementary | 856 | 865 |
| Winston Churchill Middle | 853 | 857 |
| Bella Vista High | 844 | 854 |
| Mission Avenue Open Elementary | 841 | 876 |
| Mira Loma High | 838 | 836 |
| Sierra Oaks K-8 | 836 | 825 |
| Oakview Community Elementary | 830 | 870 |
| Twin Lakes Elementary | 830 | 850 |
| Louis Pasteur Fundamental Middle | 829 | 852 |
| Arcade Fundamental Middle | 827 | 853 |
| Del Paso Manor Elementary | 826 | 853 |
| Harry Dewey Fundamental Elementary | 823 | 864 |
| Arden Middle | 822 | 852 |
| Rio Americano High | 822 | 842 |
| Earl Legette Elementary | 818 | 827 |
| Albert Schweitzer Elementary | 813 | 844 |
| Ottomon Way Elementary | 808 | 815 |
| California Montessori Project-San Juan Campus | 802 | 818 |
| Thomas Kelly Elementary | 799 | 763 |
| Woodside K-8 | 795 | 821 |
| Arlington Heights Elementary | 786 | 803 |
| El Camino Fundamental High | 778 | 798 |
| Coyle Avenue Elementary | 776 | 819 |
| Citrus Heights Elementary | 775 | 801 |
| Carriage Drive Elementary | 773 | 809 |
| Golden Valley Charter School of Sacramento | 771 | 792 |
| Casa Roble Fundamental High | 769 | 784 |
| Grand Oaks Elementary | 763 | 763 |
| Del Campo High | 760 | 756 |
| Cameron Ranch Elementary | 758 | 767 |
| Lichen K-8 | 756 | 772 |
| Pasadena Avenue Elementary | 749 | 755 |
| John Barrett Middle | 748 | 792 |
| Will Rogers Middle | 745 | 746 |
| Laurel Ruff Center | 739 | 672 |
| Northridge Elementary | 730 | 736 |
| Skycrest Elementary | 728 | 741 |
| Sylvan Middle | 727 | 773 |
| Cottage Elementary | 726 | 784 |
| Kingswood Elementary | 725 | 753 |
| Visions In Education | 722 | 718 |
| Dyer-Kelly Elementary | 705 | 716 |
| Mariposa Avenue Elementary | 703 | 717 |
| Options for Youth-San Juan | 699 | 686 |
| Charles Peck Elementary | 698 | 762 |
| Carmichael Elementary | 693 | 734 |
| El Sereno Alternative Education | 679 | 633 |
| Mesa Verde High | 674 | 695 |
| Whitney Avenue Elementary | 673 | 713 |
| Starr King K-8 | 671 | 696 |
| Greer Elementary | 663 | 686 |
| San Juan High | 661 | 627 |
| San Juan Choices Charter | 651 | 645 |
| Howe Avenue Elementary | 616 | B |
| Thomas Edison Language Institute | 597 | 711 |
| Encina Preparatory High | 582 | 581 |
| Ralph Richardson Center | 523 | 554 |
| La Vista Center | 428 | 423 |
| La Entrada Continuation High | | |
| Marvin Marshall Preschool and Children's Center | | |
| Valley Oaks | | |