| Capistrano Unified School District | 2013 API | 2012 API |
| Oxford Preparatory Academy - South Orange County | 990 | 993 |
| Ladera Ranch Middle | 954 | 956 |
| Las Flores Middle | 934 | 935 |
| Chaparral Elementary | 928 | 938 |
| Vista del Mar Middle | 928 | 930 |
| Aliso Viejo Middle | 928 | 928 |
| Vista del Mar Elementary | 924 | 937 |
| Arroyo Vista Elementary | 921 | 939 |
| Wagon Wheel Elementary | 919 | 925 |
| Bathgate Elementary | 918 | 921 |
| Don Juan Avila Middle | 916 | 926 |
| Oso Grande Elementary | 916 | 925 |
| Ladera Ranch Elementary | 914 | 934 |
| Las Flores Elementary | 914 | 910 |
| John Malcom Elementary | 910 | 923 |
| Arroyo Vista Middle | 908 | 934 |
| Tijeras Creek Elementary | 906 | 926 |
| Don Juan Avila Elementary | 904 | 904 |
| Moulton Elementary | 901 | 918 |
| Niguel Hills Middle | 901 | 909 |
| Truman Benedict Elementary | 901 | 905 |
| Newhart Middle | 899 | 916 |
| George White Elementary | 896 | 907 |
| Canyon Vista Elementary | 894 | 927 |
| Laguna Niguel Elementary | 892 | 909 |
| Castille Elementary | 891 | 922 |
| Bernice Ayer Middle | 889 | 920 |
| Capistrano Virtual/Home | 885 | 902 |
| Aliso Niguel High | 885 | 885 |
| Carl Hankey Middle | 883 | 890 |
| Tesoro High | 882 | 896 |
| Marian Bergeson Elementary | 879 | 891 |
| Community Roots Academy | 877 | 924 |
| California Preparatory Academy | 874 | B |
| Journey | 872 | 856 |
| Concordia Elementary | 871 | 893 |
| Oak Grove Elementary | 867 | 872 |
| Shorecliffs Middle | 862 | 861 |
| Dana Hills High | 857 | 863 |
| Palisades Elementary | 855 | 871 |
| Philip J. Reilly Elementary/Special Education | 852 | 868 |
| San Clemente High | 846 | 849 |
| Capistrano Valley High | 846 | 837 |
| Carl Hankey Elementary | 843 | 854 |
| San Juan Hills High | 843 | 850 |
| Clarence Lobo Elementary | 839 | 815 |
| Marco Forster Middle | 833 | 835 |
| Harold Ambuehl Elementary | 823 | 836 |
| Wood Canyon Elementary | 812 | 830 |
| Del Obispo Elementary | 811 | 821 |
| Hidden Hills Elementary | 798 | 822 |
| Crown Valley Elementary | 796 | 794 |
| San Juan Elementary | 790 | 814 |
| Capistrano Connections Academy Charter | 790 | 786 |
| Las Palmas Elementary | 778 | 819 |
| Richard Henry Dana Elementary | 771 | 785 |
| Marblehead Elementary | 769 | 796 |
| Kinoshita Elementary | 738 | 763 |
| Opportunities for Learning - Capistrano | 734 | 790 |
| Viejo Elementary | 675 | 753 |
| Richard Henry Dana Exceptional Needs | 667 | 669 |
| Junipero Serra High | 561 | 604 |
| Bridges Community Day | | |