| School Name | API (2009) | API (2008) |
| Donn B. Chenoweth Elementary | 845 | 820 |
| Allan Peterson Elementary | 832 | 785 |
| John Muir Elementary | 769 | 732 |
| Charles Wright Elementary | 761 | 737 |
| Herbert H. Cruickshank Middle | 759 | 772 |
| Franklin Elementary | 757 | 749 |
| Ada Givens Elementary | 755 | 768 |
| Luther Burbank Elementary | 749 | 724 |
| John C. Fremont Charter | 746 | 709 |
| Margaret Sheehy Elementary | 740 | 753 |
| Rudolph Rivera Middle | 731 | 729 |
| Alicia Reyes Elementary | 721 | 731 |
| Joe Stefani | 715 | 714 |
| Leontine Gracey Elementary | 712 | 696 |
| Don Stowell Elementary | 704 | 715 |
| Herbert Hoover Middle | 703 | 699 |
| Tenaya Middle | 690 | 702 |
| Merced City School District Community Day | | |