| Madera Unified School District | 2013 API | 2012 API |
| Sherman Thomas Charter | 847 | 804 |
| Lincoln Elementary | 831 | 827 |
| Howard Elementary | 807 | 814 |
| Berenda Elementary | 797 | 783 |
| John J. Pershing Elementary | 792 | 779 |
| La Vina Elementary | 791 | 764 |
| John Adams Elementary | 785 | 798 |
| Dixieland Elementary | 784 | 767 |
| Ezequiel Tafoya Alvarado Academy | 772 | 802 |
| James Monroe Elementary | 757 | 754 |
| Madera High | 757 | 747 |
| Thomas Jefferson Middle | 751 | 744 |
| Parkwood Elementary | 748 | 778 |
| Millview Elementary | 735 | 742 |
| Cesar Chavez Elementary | 730 | 745 |
| Jack G. Desmond Middle | 730 | 691 |
| George Washington Elementary | 726 | 727 |
| Alpha Elementary | 718 | 720 |
| Nishimoto Elementary | 707 | 733 |
| Madera South High | 703 | 706 |
| Martin Luther King Jr. Middle | 702 | 726 |
| Sierra Vista Elementary | 690 | 783 |
| Sherman Thomas Charter High | 676 | 710 |
| James Madison Elementary | 671 | 711 |
| Furman (Duane E.) High (Independent Study Program) | 658 | 690 |
| Eastin-Arcola High | 522 | 581 |