| Fresno Unified School District | 2013 API | 2012 API |
| Manchester Gate | 996 | 998 |
| Morris E. Dailey Charter Elementary | 952 | 950 |
| Edison Computech | 947 | 946 |
| University High | 916 | 926 |
| Design Science Early College High | 909 | 913 |
| Forkner Elementary | 872 | 880 |
| Baird Middle | 866 | 874 |
| Bullard Talent Project | 865 | 849 |
| Eaton Elementary | 860 | 850 |
| McCardle Elementary | 843 | 842 |
| Gibson Elementary | 822 | 857 |
| Akira Yokomi Elementary | 820 | 822 |
| Webster Elementary | 810 | 797 |
| Malloch Elementary | 809 | 850 |
| Thomas Elementary | 808 | 811 |
| Kratt Elementary | 808 | 805 |
| Figarden Elementary | 801 | 798 |
| Valley Preparatory Academy Charter | 799 | 832 |
| Starr Elementary | 794 | 822 |
| Florence E. Rata | 792 | 753 |
| Robinson Elementary | 787 | 793 |
| Edith B. Storey Elementary | 785 | 779 |
| Ezekiel Balderas Elementary | 775 | 742 |
| Ayer Elementary | 773 | 771 |
| Lincoln Elementary | 771 | 784 |
| Roeding Elementary | 768 | 773 |
| Edison High | 768 | 764 |
| Jefferson Elementary | 766 | 774 |
| Ann B. Leavenworth | 763 | 777 |
| Wolters Elementary | 763 | 774 |
| Ericson Elementary | 762 | 779 |
| Bullard High | 758 | 769 |
| Cooper Middle | 753 | B |
| Tenaya Middle | 752 | 779 |
| Vinland Elementary | 752 | 746 |
| Holland Elementary | 752 | 742 |
| Jackson Elementary | 752 | 736 |
| Viking Elementary | 751 | 768 |
| Wishon Elementary | 748 | 770 |
| Easterby Elementary | 747 | 795 |
| Hamilton Elementary | 747 | 755 |
| Fremont Elementary | 747 | 747 |
| Powers-Ginsburg Elementary | 746 | 769 |
| Pyle Elementary | 746 | 763 |
| Lowell Elementary | 746 | 752 |
| Burroughs Elementary | 745 | 773 |
| Kings Canyon Middle | 745 | 738 |
| Calwa Elementary | 743 | 730 |
| Wilson Elementary | 740 | 763 |
| Birney Elementary | 739 | 745 |
| Lane Elementary | 736 | 738 |
| Carver Academy | 735 | 695 |
| Erma Duncan Polytechnical High | 731 | 736 |
| Sunset Elementary | 730 | 760 |
| Wawona Middle | 728 | 739 |
| Ahwahnee Middle | 725 | 708 |
| Aynesworth Elementary | 722 | 747 |
| Rowell Elementary | 720 | 730 |
| Lawless Elementary | 719 | 713 |
| Centennial Elementary | 718 | 736 |
| Ewing Elementary | 717 | 710 |
| Turner Elementary | 715 | 698 |
| Del Mar Elementary | 710 | 726 |
| Muir Elementary | 706 | 703 |
| David L. Greenberg Elementary | 705 | 726 |
| Susan B. Anthony Elementary | 705 | 726 |
| Tioga Middle | 705 | 702 |
| Mayfair Elementary | 703 | 719 |
| Herbert Hoover High | 703 | 713 |
| Molly S. Bakman Elementary | 702 | 736 |
| Yosemite Middle | 700 | 669 |
| Vang Pao Elementary | 700 | 649 |
| Mario G. Olmos Elementary | 697 | 728 |
| Deborah A. Williams Elementary | 696 | 697 |
| Miguel Hidalgo Elementary | 694 | 690 |
| Norseman Elementary | 693 | 708 |
| Homan Elementary | 689 | 737 |
| Winchell Elementary | 689 | 725 |
| Sunnyside High | 689 | 704 |
| Addams Elementary | 685 | 701 |
| Scandinavian Middle | 684 | 660 |
| King Elementary | 683 | 679 |
| Elizabeth Terronez Middle | 683 | 675 |
| Kirk Elementary | 680 | 688 |
| Fort Miller Middle | 676 | 693 |
| Columbia Elementary | 674 | 672 |
| Slater Elementary | 667 | 648 |
| Valley Arts and Science Academy (VASA) | 660 | 676 |
| Sierra Charter | 657 | 664 |
| Fresno High | 653 | 649 |
| Heaton Elementary | 650 | 681 |
| Sequoia Middle | 647 | 651 |
| Tehipite Middle | 641 | 645 |
| Irwin O. Addicott Elementary | 640 | 597 |
| Roosevelt High | 626 | 654 |
| McLane High | 617 | 629 |
| Fresno Academy for Civic and Entrepreneurial Leadership | 586 | 626 |
| Carter G. Woodson Public Charter | 540 | 468 |
| School of Unlimited Learning | 514 | 581 |
| Cambridge Continuation High | 492 | 519 |
| J. E. Young Academic Center | 491 | 498 |
| Dewolf Continuation High | 442 | 430 |
| New Millennium Institute of Education Charter | 415 | 472 |
| Phoenix Elementary Academy Community Day | | |
| Phoenix Secondary | | |