| School Name | API (2009) | API (2008) |
| Valley Oak Elementary | 958 | 935 |
| Maple Creek Elementary | 946 | 932 |
| James S. Fugman Elementary | 943 | 932 |
| Liberty Elementary | 935 | 905 |
| Garfield Elementary | 934 | 915 |
| Riverview Elementary | 934 | 923 |
| Woods (Harold L.) Elementary | 929 | 905 |
| Fort Washington Elementary | 924 | 912 |
| Freedom Elementary | 918 | 883 |
| Copper Hills Elementary | 917 | 909 |
| Dry Creek Elementary | 916 | 908 |
| Bud Rank Elementary | 913 | 891 |
| Red Bank Elementary | 913 | 894 |
| Century Elementary | 902 | 895 |
| Granite Ridge Intermediate | 899 | 877 |
| Cedarwood Elementary | 897 | 892 |
| Lincoln Elementary | 893 | 856 |
| Gettysburg Elementary | 887 | 894 |
| Cole Elementary | 885 | 874 |
| Cox Elementary | 883 | 846 |
| Mountain View Elementary | 876 | 869 |
| Jefferson Elementary | 873 | 843 |
| Clovis North High | 867 | 859 |
| Alta Sierra Intermediate | 864 | 852 |
| Nelson Elementary | 863 | 864 |
| Clovis Elementary | 861 | 841 |
| Miramonte Elementary | 860 | 847 |
| Reagan Elementary | 855 | 816 |
| Kastner Intermediate | 848 | 852 |
| Clovis West High | 845 | 845 |
| Buchanan High | 845 | 847 |
| Fancher Creek Elementary | 834 | 815 |
| Weldon Elementary | 827 | 817 |
| Sierra Vista Elementary | 824 | 816 |
| Tarpey Elementary | 804 | 784 |
| Reyburn Intermediate | 801 | 783 |
| Clark Intermediate | 800 | 799 |
| Clovis High | 798 | 803 |
| Clovis East High | 791 | 768 |
| Pinedale Elementary | 771 | 767 |
| Enterprise Alternative | 649 | 662 |
| Gateway High (Continuation) | 553 | 589 |
| Clovis Community Day Elementary | | |
| Clovis Community Day Secondary | | |
| Clovis Adult | | |
| Center for Advanced Research and Technology | | |
| Temperance-Kutner Elementary | | |